Resources

A short literature review for Bipartite Networks can be found at
http://ella.slis.indiana.edu/~ssanyal/myannote.pdf

A short literature review for Feedback Cycles in Networks can be found at
http://ella.slis.indiana.edu/~ssanyal/feedback.pdf

Papers on Diffusion of Networks

Diffusion-Annihilation Processes in Complex Networks
M. Catanzaro, M. Boguna and R. Pastor-Satorras,
Physical Review E, 71, 056104 (2005).

Reaction-Diffusion Processes of Three Species on Small-World Networks
K. Kim, K. H. Chang, M-K Yum, J. S. Choi and T. Odagaki.

Absence of Kinetic Effects in Reaction-Diffusion Processes in Scale-Free Networks
L. K. Gallos and P. Argyrakis,
Phys. Rev. Lett. 92, 138301 (2004).

Migration-Driven Aggregate Growth on Scale-Free Networks
J. Ke, Z. Lin, Y. Zheng, X. Chen and W. Lu,
Phys. Rev. Lett. 97, 028301 (2006).

Other Relevant Papers

The Scaling Laws of Human Travel
D. Brockmann, L. Hufnagel and T. Geisel,
Nature 439, 462-465 (26 January 2006).

Learning About Knowledge: A Complex Network Approach
Luciano da Fontoura Costa.

For more recent papers refer to Soma Sanyal's library:
http://www.citeulike.org/user/somasanyal

Agent Based Modeling

MASON http://cs.gmu.edu/~eclab/projects/mason/
NETLOGO http://ccl.northwestern.edu/netlogo/